Data Release-20 from the Genomic Data Commons (GDC) includes 
genomics from a new CPTAC project!
The CPTAC Proteogenomic Confirmatory Study examined prospectively collected colon, breast and ovarian tumors for analysis, including harmonized whole exome sequencing, RNA-Seq, and miRNA-Seq that is now available. Complimentary proteomic and phosphoproteomic analysis can also be found on the CPTAC Data Portal and the Proteomic Data Commons (PDC).
CPTAC has provided the Genomic Data Commons (GDC) with genomic data from over 600 cancer patients with diverse disease types including Lung Adenocarcinoma, Endometrial, Renal, Breast, Colon and Ovarian cancers. The GDC harmonized DNA sequences from CPTAC using GDC DNA-Seq Analysis Pipelines and mRNA Analysis Pipelines. CPTAC proteomic data are processed through the CPTAC Common Data Analysis Pipeline (CDAP).